- "Genomes: at the edge of chaos with maximum information capacity"
(PDF file)
- The 4th International Workshop Hangzhou 2007 on
Simulational Physics, Zhejian University, Hangzhou, 2007 November 10-12
- Canada-Taiwan Symposium on Biotechnology,
Information and Energy Technology, Vancouver, Canada, 2007 October 20-21
- Ottawa Institute of Systems Biology,
University of Ottawa, Ottawa, Canada, 2007 October 18
- "Physics and Evolution of Genomic Sequences"
- Carleton University, Ottawa, Canada, 2007 October 16
- "An order index for genomes - information capacity for genomes and literary texts"
- 10th Anniversary Symposim, National Center for Theoretical Sciences,
Hsinchu, 2007 September 4
- University of Georgia, Athens, GA, USA, 2007 August 20
- BioComplex-Taiwan 2007, Academia Sinica, Taipei, 2007 August 9
- "Complexity, Symmetry, & Physics in Genomes"
- Natinonal Taiwan Univ. 2007 May 8
- "Physics in the Depth of Genomes"
- Annual Meeting of Physics Society of ROC, National Tsinghua Univ. 2007 January 14
- "Randomness, Order, and Symmetry in Genomes."
- Mini-Workshop in Quantitative Biology,
National Central University, Chungli, Taiwan, December 27, 2006.
- "The Blind Self-Copier - Universality and self-organized criticality in genomes."
- International Symposium on the Recent Progress in Quantitative and Systems Biology,
The Chinese University of Hong Kong, December 9-11, 2006.
- The 3rd International Workshop Hangzhou 2006 on Simulational Physics,
Zhejiang University, Hangzhou, China, November 15-18, 2006.
- Center for Bioinformatics, Hamburg University, Hamburg, Germany, October 2, 2006.
- "The Blind Self-Copier - Universality and self-organized criticality in genomes."
Jilin University, Changchun, July 5, 2006
Institute of Biophysics, Beijing, July 10, 2006
Center for Bioinformatics, Beijing University, July 12, 2006
Institute of Theoretical Physics, Beijing, July 14, 2006.
- "Emergence and Spontaneous Symmetry Breaking in Genome - Evolution by Cellular Automata". The Fifth Meeting of Chinese Physicists Worldwide (OCPA 5), National Taiwan University, Taipei, June 27-30, 2006.
- "Emergence and Spontaneous Symmetry Breaking in Genome - Evolution by Cellular Automata". The Fifth Cross-Strait Workshop on Biology Inspired Theoretical Science (BITS 5), Dunghai University, Taichung, June 21-25, 2006.
- "Studies of stability of H1 helix in prion protein" (PDF file). International Symposium on Biomolecules, National Taiwan Normal University, June 18-20, 2006.
- "The Blind Self-Copier - Entropy, universality, inflation and spontaneous symmetry breaking in the growth of genomes" (PDF file). The 19th Taiwan Spring School on Particles and Fields, Chung-Yuan Christian University, April 1-4, 2006.
- "Emergence and spontaneous symmetry breaking in the evolution of genome by Cellular Automata" (PDF file). 2006 NCTS Spring Workshop on Critical Phenomena and Complex Systems, The Chinese Cultural University, Taipei, March 31-April 1, 2006.
- "The Blind Self-Copier - Universality, inflation and spontaneous symmetry breaking in genome growth" Colloquium, Department of Physics, Tsing Hua University, Wednesday, March 8, 2006.
- "Physics and Origins" (PDF file, in Chinese). Public Lecture. The Autumn 2005 Outlook Series of public talks. Institute of Mechanics, National Taiwan University, Friday November 25, 2005. [National Science Council News 2005/11/26]
- November 15-18. Six lectures on computational genomics and
molecular evolution.
Zhejiang University, Hangzhou, China.
- "Evolution of DNA by cellular automata".
Colloquium, Zhejiang University, November 18.
- Friday, September 23. ROC Physical Society 2005 "Year of Physics"
Public Lecture. Ma-Gong High School, Mu-Gong, Penghu.
"Physics and Origins"
- Saturday, September 17. ROC Physical Society 2005 "Year of Physics"
Public Lecture. Fu-Dan High School, Chungli.
"Physics and Origins"
- Friday September 9. Center for Bioinformatics, Koeln University, Germany.
"Information, Complexity, Universality, and Growth and Evolution of Genomes"
- Wednesday September 7. Center for Bioinformatics, Hamburg University, Germany.
"Information, Complexity, Universality, and Growth and Evolution of Genomes"
- Wednesday July 20. Invited talk at "International Conference on
Bio-Nano-Information Fusion", July 20-22, Marina del Rey, CA, USA.
"Information, Complexity, Universality, and Growth and Evolution of Genomes"
- "Complexity, universality, self-similarity and the growth of complete genomes" (PDF file). Wednesday July 13. Seminar at "Santa Fe Institute 2005 Complex Systems Summer School", Beijing, China, July 9- August 5, 2005.
- Wednesday July 6, 2005. Invited talk at "Changchun International
Bioinformatics Workshop", July 5-8, Jilin University, ChangChun, China.
"Complexity, universality, self-similarity and the growth of
complete genomes"
- Monday, June 6. Invited talk at 2005 Annual Congress, Canadian
Association of
Physicists, June 5-8, University of British Columbia, Vancouver, Canada.
"Universality and growth of complete genomes"
- Tuesday, May 31. Invited talk at "Workshop on Astrobiology and the
origins of life", May 30 - June 4, McMaster University, Hamilton, Canada.
"Universality and growth of complete genomes"
- Friday, April 15. Invited talk at "Workshop on Evolutionary Genetics
and Systems Biology", Yang Ming U., Taipei.
"Systematics and some open problems in complete genomes"
- Thursday, February 3, 2005. Invited talk at Annual Congress, Physical
Society of ROC, National Sun-Yatsan U., Kaohsiung.
"Complexity, Length Invariance, Universality, and Growth of Genomes"
- Friday, January 14, 2005. Seminar at Santa Fe Institute, Santa Fe, USA
"Complexity, Length Invariance, Universality, and Growth of Genomes"
- September 1-4, Genoa, Italy, Conference on Computational Physics 2004
"Shannon Information and Self-Similarity in Whole Genomes"
- August 17-19, Stanford,USA, IEEE Conference on Computational Biology (CSB2004)
"Shannon information in Complete Genomes"
- July 3, Hangzhou, China, Mini-workshop on Computational Physics
"Protein Studies by Massively Distributed Computing" (By Lo Ji-Lin)
- June 28 - July 1, Shanghai, China, Fourth Joint Meeting of Chinese Physicists Worldwide
"Looking at Whole Genomes - Information, growth and evolution"
- June 24-28, Xiamen, China, Fourth Cross-Strait Biology Inspired Theoretical Problems
"Looking at Whole Genomes - Information, growth and evolution"
"Universality in complete genomes" (By Hsieh Li-Ching)
"DNA Uptake Signal Sequences in Human Pathogens" (By Chen Da-Yuan)
"Protein Studies by Massively Distributed Computing" (By Lo Ji-Lin)
- June 20-21, Taipei, Systems Biology Workshop
"Looking at Whole Genomes - Information, growth and evolution"
- May 26-28, Taipei, AS, Ninth Symposium of Recent Advances in Biophysics
"Universality in Complete Genomes" (By Hsien Li-Ching)
- May 16-22, Shanghai, China, Fudan/SFI Biocomplexity Workshop
"Shannon information and Self-Similarity in Whole Genomes"
- April 5-6, Taipei, German-Taiwan Symposium on Bioinformatics
"Shannon information and Self-Similarity in Whole Genomes"
- Feb. 24-27, Beijing, NSF (China) Workshop on Theo. Phys. & Related Interdisciplinary Fields
"Shannon information in Complete Genomes"
- Feb. 27-29, Workshop on Biosequence and Biomolecules, Center for Cross-Disciplinary Research, I. Phys. Beijing
"Shannon information in Complete Genomes"
- "Growth of microbial genomes by short segmental duplications and the RNA world" 2003 Taipei Winter Workshop on Biological Evolution and Related Problems, 2003 February 10-11, Inst. Physics, Academia Sinica, Taipei
- "Growth of Bacterial Genomes by Self-Copying" (Poster) LC Hsieh and HC Lee American Biophysical Society Annual Meeting 2003 March 1-5, San Antonio, Texas
- "Evidence for growth of Genomes by Segmental Duplication" Comparative Genomics Workshop 2003 March 28, Taichung Health and Management University
- "Genomes are Large Systems with Small-System Statistics: Genome Growth by Segmental Duplication" Systems Biology Symposium 2003 April 15-17, Inst. Biochemistry/AS, Taipei
- "Why do different bacterial species share common DNA Uptake Signal Sequences." Bakkali, M., Chen, T.-Y., Lee, H. C. and Redfield, R. J. Annual Joint Meeting of the Society for the Study of Evolution, Society of Systematic Biologists, and American Society of Naturalists: Evolution 2003. 2003 June 19-24, Chico, California, USA.
- "Evolution of DNA Uptake Signal Sequences in bacterial genomes" Bakkali, M., Chen, T. -Y., Lee, H. C. and Redfield, R. J. Gordon Research Conferences 2003 (Applied and Environmental Microbiology). 2003 July 27-August 1, Connecticut, USA.
- "Search for Evolution-Related-Oligonucleotides and Conservative Words in rRNA Sequences" (Poster) L.F. Luo, L.C. Hsieh, F.M. Ji, M.W. Jia and H.C. Lee IEEE Computer Society Bioinformatics Conference (CSB'03) 2003 August 11 - 14, Stanford, California IEEE Proc. Comp. Sys. Bioinformatics, (2003) 468-469
- "Evidence for Growth of Microbial Genomes by Short Segmental Duplications" (Poster) L.C. Hsieh, L.F. Luo and H.C. Lee IEEE Computer Society Bioinformatics Conference (CSB'03) 2003 August 11 - 14, Stanford, California IEEE Proc. Comp. Sys. Bioinformatics, (2003) 474-475
- "DNA Uptake Signal Sequences: Genesis and evolution" (Talk by Bakkali) Bakkali, M., Chen, T. -Y., Lee, H. C. and Redfield, R. J. American Society for Microbiology, Northwest Branch Meeting. 2003 August 7-10, Vancouver, Canada.
- "Quasireplicas and universal lengths of microbial genomes" * First Cross-Strait Workshop on Statistical Physics, 2003 August 27-31, Yangzhou, China
- "Why are DNA Uptake Signal Sequences over-represented in the genomes of most Pasteurellaceae bacterial species?" (Talk by Bakkali) Bakkali, M., Chen, T.-Y., Lee, H. C. and Redfield, R. J. 2003 Pacific Northwest Ecology and Evolution Retreat. October 31-November 2, 2003, Port Moody, Canada.
- "Massively Distributed Molecular Dynamics Simulation of Proteins and Parallel Tempering" Workshop on Theoretical approaches to self-assembly in protein and RNA folding 2003 December 15-19, National Center for Theoretical Science, Shinchu
- "Shannon information in Complete Genomes" CH Chang, LC Hsieh, TY Chen, HC Lee *Annual Congress of Mathematical Society of ROC 2003 December 19-21, NCU, Chungli
Colloquial/Seminar Talks
- "Genomes are large systems with small-system statistics: Model for growth and evolution of genomes", NTHU Colloquium, 2003 Wednesday Feb 19
- "Model for the Growth of Universal Genome", 2003 Thursday March 20, Inst. Phys. AS, Taipei
- "Quasireplicas and universal lengths of microbial genomes", * Center for Theoretical Biology, Beijing University 2003 August 18 * Institute for Theoretical Physics, Chinese Academy of Science Beijing, 2003 August 22
- "Universality in large-scale structure of complete genomes", * National Center for Theoretical Sciences, 2003 September 25 * National Central University, 2003 September 30
- "Models for evolution of whole genomes", 2002 International Workshop on Bioinformatics, Feb 18-20, 2002, Taipei
- "Models for evolution of whole genomes", Annual Meeting of ROC Physical Society 2002, Feb, 2002, Taichung Chaired plenary session Gave talk:
- "Models for evolution of whole genomes", NCTS informal talk on Mathematics \& Biology, 2003 Mar 12
- "Lessons on protein structure from lattice models", Nanjing University Centennial Interdisciplinary Condensed Matter Workshop, May 22-24, 2002, Nanjing
- 8th Annual Meeting of ROC Biophysical Society, May 22-25, 2002, Taipei, (Chaired a session)
- "Model for growth and evolution of whole genomes", StatPhys-Taiwan-2002, May 26 to June 1, Taipei and Nantou
- "The Human Genome Project and its aftermath - An introduction", Workshop on Bioinformatics, Thursday May 30, CS, Zhong-Zheng U. (Yuh-Jye Lee)
- "Model for growth and evolution of whole genomes", Seminar Thursday June 6 Physics, Zhong-Zheng U. (Dian-Jiun Han)
- "Models for the growth of whole genomes", International Symposium on Frontiers of Science: In Celebration of the 80th Birthday of Chen Ning Yang; June 17 -19, 2002, Beijing
- Second Eastern Formosa Summer School on Biophysics July 1-7, 2002, Donghua University, Hualien Four Lectures on Computational Biology: * Biosequence alignment * The Hidden Markov Model * Evolution and Phylogeny * Microarray analysis
- "Model for growth and evolution of whole genomes", BITS3 - Third Cross-Strait Workshop on Biology Inspired Problems July 8-15, 2002, Hualien (see above)
- "Model for growth and evolution of whole genomes" (poster), 4th UNESCO INTERNATIONAL CONFERENCE ON THEORETICAL PHYSICS 22-27 July 2002, Paris First three UNESCO Conf Theo Phys held in 1956, 1958, 1968, respectively. This one had ~1,200 attendances including all the leading figures in theoretical physics
- Seminars on "Minimal model for genome growth and evolution" * Monday, 2002 October 21 Department d'Informatique et de R.O., Université de Montréal, (CRM Bldg) (Francois Major) * Tuesday 2002 Oct 22 Dept. Phys, McGill, (Harry Lam) * Wednesday, 2002 Nov 27 CTB, Beijing University (Lai Luhua) * Tuesday, 2002 December 3 ITP/AS Beijing (Ouyang)
- "Protein Bio-Computing: MD studies of protein structure and function by Massively distributed computing", The Bioinformatics and BioGrid 2002 Workshop on BioGrid Technology, Friday, Nov. 8, 2002, NCHC, Tainan
- "DNA uptake signal sequences in some human pathogens", Colloquium, Bioinformatics education program, National Yang-Ming University (Tsou Ann-Ping), Wednesday, 2002 Nov. 13
- "Lessons from lattice model on protein structure and massively distributed computational studies on protein structure", CCAST Workshop on Protein Structure, November 18-22, Beijing
- First Winter School on Modern Biophysics, NTU (Hwang Pauchy) December 16-20, 2002 Tuesday December 17, Two lectures: 1. "Looking at Whole Genomes: Frequency of Occurrence of Oligonucleotides" 2. "Genomes Are Large Systems with Small-System Statistics: Growth of Genomes by Duplication"
- BITS3: Third Cross-Strait Workshop on Biology Inspired Problems July 8-15, 2002, Hualien
- International Workshop on Brain Dynamics December 21-22, 2003, Chungli